Usage Reference for `pyvisfile.silo`#

pyvisfile.silo.get_silo_version()#

pyvisfile.silo.set_deprecate_warnings(max)#: Silo 4.6.1 or newer only.

Database file object#

class pyvisfile.silo.SiloFile[source]#

close()#

get_toc()#: Returns a DBToc instance.

get_curve(name)#: Returns a DBCurve instance.

get_quadmesh(name)#: Returns a DBQuadMesh instance.

get_quadvar(name)#: Returns a DBQuadVar instance.

put_curve(*args, **kwargs)[source]#

Overloaded function.

put_curve(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float32], arg2: numpy.ndarray[numpy.float32], arg3: (anonymous namespace)::DBoptlistWrapper) -> None
put_curve(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float64], arg2: numpy.ndarray[numpy.float64], arg3: (anonymous namespace)::DBoptlistWrapper) -> None

put_defvars(vname, vars)[source]#

Add an defined variable (“expression”) to this database.

The vars argument consists of a list of tuples of type (name, definition) or (name, definition, DB_VARTYPE_SCALAR | DB_VARTYPE_VECTOR) or even (name, definition, DB_VARTYPE_XXX, {options}) If the type is not specified, scalar is assumed.

put_multimesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: Sequence, arg2: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_multivar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: Sequence, arg2: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_pointmesh(*args, **kwargs)[source]#

Overloaded function.

put_pointmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float32], arg2: (anonymous namespace)::DBoptlistWrapper) -> None
put_pointmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float64], arg2: (anonymous namespace)::DBoptlistWrapper) -> None

put_pointvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_pointvar1(*args, **kwargs)[source]#

Overloaded function.

put_pointvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: (anonymous namespace)::DBoptlistWrapper) -> None
put_pointvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: (anonymous namespace)::DBoptlistWrapper) -> None

put_quadmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: object, arg2: int, arg3: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_quadvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: object, arg4: object, arg5: int, arg6: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_quadvar1(*args, **kwargs)[source]#

Overloaded function.

put_quadvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: Sequence, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) -> None
put_quadvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: Sequence, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) -> None

put_ucdmesh(*args, **kwargs)[source]#

Overloaded function.

put_ucdmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: Sequence, arg2: numpy.ndarray[numpy.float32], arg3: int, arg4: str, arg5: str, arg6: (anonymous namespace)::DBoptlistWrapper) -> None
put_ucdmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: Sequence, arg2: numpy.ndarray[numpy.float64], arg3: int, arg4: str, arg5: str, arg6: (anonymous namespace)::DBoptlistWrapper) -> None

put_ucdvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: object, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) → None[source]#

put_ucdvar1(*args, **kwargs)[source]#

Overloaded function.

put_ucdvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: int, arg4: (anonymous namespace)::DBoptlistWrapper) -> None
put_ucdvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: int, arg4: (anonymous namespace)::DBoptlistWrapper) -> None

put_zonelist_2(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: int, arg2: int, arg3: std::vector<int, std::allocator<int> >, arg4: int, arg5: int, arg6: std::vector<int, std::allocator<int> >, arg7: std::vector<int, std::allocator<int> >, arg8: std::vector<int, std::allocator<int> >, arg9: (anonymous namespace)::DBoptlistWrapper) → None[source]#

Support for Parallel Computation#

class pyvisfile.silo.ParallelSiloFile(pathname, rank, ranks, *args, **kwargs)[source]#

A SiloFile that automatically creates a parallel master file.

This class is meant to be instantiated on every rank of an MPI computation. It creates one data file per rank, and it automatically chooses a rank that writes a master file.

The contents of the master file is automatically built, without any further user intervention.

A .silo extension is automatically appended to pathname for the master file, as are rank numbers and the extension for each individual rank.

This class can be used as a context manager in with statement.

__init__(pathname, rank, ranks, *args, **kwargs)[source]#

close()[source]#

put_zonelist(*args, **kwargs)[source]#

put_zonelist_2(*args, **kwargs)[source]#

put_ucdmesh(mname, coordnames, coords, nzones, zonel_name, facel_name, optlist)[source]#

put_ucdvar1(vname, mname, vec, centering, optlist=None)[source]#

put_ucdvar(vname, mname, varnames, vars, centering, optlist=None)[source]#

put_defvars(vname, vars)[source]#

Add an defined variable (“expression”) to this database.

The vars argument consists of a list of tuples of type (name, definition) or (name, definition, DB_VARTYPE_SCALAR | DB_VARTYPE_VECTOR). or even (name, definition, DB_VARTYPE_XXX, {options}). If the type is not specified, scalar is assumed.

put_pointmesh(mname, coords, optlist=None)[source]#

put_pointvar1(vname, mname, var, optlist=None)[source]#

put_pointvar(vname, mname, vars, optlist=None)[source]#

put_quadmesh(mname, coords, coordtype=130, optlist=None)[source]#

put_quadvar1(vname, mname, var, dims, centering, optlist=None)[source]#

put_quadvar(vname, mname, varnames, vars, dims, centering, optlist=None)[source]#

Supporting Objects#

class pyvisfile.silo.IntVector#

append(val)#

extend(iterable)#

reserve(count)#

Data objects#

class pyvisfile.silo.DBToc#

array_names#

csgmesh_names#

csgvar_names#

curve_names#

defvars_names#

dir_names#

groupelmap_names#

mat_names#

matspecies_names#

mrgtree_names#

mrgvar_names#

multimat_names#

multimatspecies_names#

multimesh_names#

multimeshadj_names#

multivar_names#

obj_names#

ptmesh_names#

ptvar_names#

qmesh_names#

qvar_names#

ucdmesh_names#

ucdvar_names#

var_names#

class pyvisfile.silo.DBCurve#

id#

origin#

reference#

title#

x#

xlabel#

xunits#

xvarname#

y#

ylabel#

yunits#

yvarname#

class pyvisfile.silo.DBQuadMesh#

base_index#

block_no#

coord_sys#

coords#

coordtype#

cycle#

dtime#

facetype#

group_no#

guihide#

id#

labels#

major_order#

max_extents#

max_index#

min_extents#

min_index#

mrgtree_name#

name#

ndims#

nnodes#

nspace#

origin#

planar#

size_index#

start_index#

stride#

time#

units#

class pyvisfile.silo.DBQuadVar#

align#

ascii_labels#

cycle#

dtime#

guihide#

id#

label#

major_order#

max_index#

meshid#

meshname#

min_index#

mixlen#

name#

ndims#

nels#

nvals#

origin#

stride#

time#

units#

use_specmf#

vals#

Constants#

Drivers#

pyvisfile.silo.DB_NETCDF#

pyvisfile.silo.DB_PDB#

pyvisfile.silo.DB_TAURUS#

pyvisfile.silo.DB_UNKNOWN#

pyvisfile.silo.DB_DEBUG#

pyvisfile.silo.DB_HDF5#

The below entries only work for Silo 4.6.1 and newer.

pyvisfile.silo.DB_HDF5_SEC2#

pyvisfile.silo.DB_HDF5_STDIO#

pyvisfile.silo.DB_HDF5_CORE#

pyvisfile.silo.DB_HDF5_MPIO#

pyvisfile.silo.DB_HDF5_MPIOP#

Flags for DBCreate#

pyvisfile.silo.DB_CLOBBER#

pyvisfile.silo.DB_NOCLOBBER#

Flags for DBOpen#

pyvisfile.silo.DB_READ#

pyvisfile.silo.DB_APPEND#

Target machine for DBCreate#

pyvisfile.silo.DB_LOCAL#

pyvisfile.silo.DB_SUN3#

pyvisfile.silo.DB_SUN4#

pyvisfile.silo.DB_SGI#

pyvisfile.silo.DB_RS6000#

pyvisfile.silo.DB_CRAY#

pyvisfile.silo.DB_INTEL#

Options#

pyvisfile.silo.DBOPT_ALIGN#

pyvisfile.silo.DBOPT_COORDSYS#

pyvisfile.silo.DBOPT_CYCLE#

pyvisfile.silo.DBOPT_FACETYPE#

pyvisfile.silo.DBOPT_HI_OFFSET#

pyvisfile.silo.DBOPT_LO_OFFSET#

pyvisfile.silo.DBOPT_LABEL#

pyvisfile.silo.DBOPT_XLABEL#

pyvisfile.silo.DBOPT_YLABEL#

pyvisfile.silo.DBOPT_ZLABEL#

pyvisfile.silo.DBOPT_MAJORORDER#

pyvisfile.silo.DBOPT_NSPACE#

pyvisfile.silo.DBOPT_ORIGIN#

pyvisfile.silo.DBOPT_PLANAR#

pyvisfile.silo.DBOPT_TIME#

pyvisfile.silo.DBOPT_UNITS#

pyvisfile.silo.DBOPT_XUNITS#

pyvisfile.silo.DBOPT_YUNITS#

pyvisfile.silo.DBOPT_ZUNITS#

pyvisfile.silo.DBOPT_DTIME#

pyvisfile.silo.DBOPT_USESPECMF#

pyvisfile.silo.DBOPT_XVARNAME#

pyvisfile.silo.DBOPT_YVARNAME#

pyvisfile.silo.DBOPT_ZVARNAME#

pyvisfile.silo.DBOPT_ASCII_LABEL#

pyvisfile.silo.DBOPT_MATNOS#

pyvisfile.silo.DBOPT_NMATNOS#

pyvisfile.silo.DBOPT_MATNAME#

pyvisfile.silo.DBOPT_NMAT#

pyvisfile.silo.DBOPT_NMATSPEC#

pyvisfile.silo.DBOPT_BASEINDEX#

pyvisfile.silo.DBOPT_ZONENUM#

pyvisfile.silo.DBOPT_NODENUM#

pyvisfile.silo.DBOPT_BLOCKORIGIN#

pyvisfile.silo.DBOPT_GROUPNUM#

pyvisfile.silo.DBOPT_GROUPORIGIN#

pyvisfile.silo.DBOPT_NGROUPS#

pyvisfile.silo.DBOPT_MATNAMES#

pyvisfile.silo.DBOPT_EXTENTS_SIZE#

pyvisfile.silo.DBOPT_EXTENTS#

pyvisfile.silo.DBOPT_MATCOUNTS#

pyvisfile.silo.DBOPT_MATLISTS#

pyvisfile.silo.DBOPT_MIXLENS#

pyvisfile.silo.DBOPT_ZONECOUNTS#

pyvisfile.silo.DBOPT_HAS_EXTERNAL_ZONES#

pyvisfile.silo.DBOPT_PHZONELIST#

pyvisfile.silo.DBOPT_MATCOLORS#

pyvisfile.silo.DBOPT_BNDNAMES#

pyvisfile.silo.DBOPT_REGNAMES#

pyvisfile.silo.DBOPT_ZONENAMES#

pyvisfile.silo.DBOPT_HIDE_FROM_GUI#

Error trapping method#

pyvisfile.silo.DB_TOP#

pyvisfile.silo.DB_NONE#

pyvisfile.silo.DB_ALL#

pyvisfile.silo.DB_ABORT#

pyvisfile.silo.DB_SUSPEND#

pyvisfile.silo.DB_RESUME#

Errors#

pyvisfile.silo.E_NOERROR#

pyvisfile.silo.E_BADFTYPE#

pyvisfile.silo.E_NOTIMP#

pyvisfile.silo.E_NOFILE#

pyvisfile.silo.E_INTERNAL#

pyvisfile.silo.E_NOMEM#

pyvisfile.silo.E_BADARGS#

pyvisfile.silo.E_CALLFAIL#

pyvisfile.silo.E_NOTFOUND#

pyvisfile.silo.E_TAURSTATE#

pyvisfile.silo.E_MSERVER#

pyvisfile.silo.E_PROTO#

pyvisfile.silo.E_NOTDIR#

pyvisfile.silo.E_MAXOPEN#

pyvisfile.silo.E_NOTFILTER#

pyvisfile.silo.E_MAXFILTERS#

pyvisfile.silo.E_FEXIST#

pyvisfile.silo.E_FILEISDIR#

pyvisfile.silo.E_FILENOREAD#

pyvisfile.silo.E_SYSTEMERR#

pyvisfile.silo.E_FILENOWRITE#

pyvisfile.silo.E_INVALIDNAME#

pyvisfile.silo.E_NOOVERWRITE#

pyvisfile.silo.E_CHECKSUM#

pyvisfile.silo.E_NERRORS#

Definitions for MAJOR_ORDER#

pyvisfile.silo.DB_ROWMAJOR#

pyvisfile.silo.DB_COLMAJOR#

Definitions for COORD_TYPE#

pyvisfile.silo.DB_COLLINEAR#

pyvisfile.silo.DB_NONCOLLINEAR#

pyvisfile.silo.DB_QUAD_RECT#

pyvisfile.silo.DB_QUAD_CURV#

Definitions for CENTERING#

pyvisfile.silo.DB_NOTCENT#

pyvisfile.silo.DB_NODECENT#

pyvisfile.silo.DB_ZONECENT#

pyvisfile.silo.DB_FACECENT#

pyvisfile.silo.DB_BNDCENT#

Definitions for COORD_SYSTEM#

pyvisfile.silo.DB_CARTESIAN#

pyvisfile.silo.DB_CYLINDRICAL#

pyvisfile.silo.DB_SPHERICAL#

pyvisfile.silo.DB_NUMERICAL#

pyvisfile.silo.DB_OTHER#

Definitions for ZONE FACE_TYPE#

pyvisfile.silo.DB_RECTILINEAR#

pyvisfile.silo.DB_CURVILINEAR#

Definitions for PLANAR#

pyvisfile.silo.DB_AREA#

pyvisfile.silo.DB_VOLUME#

Definitions for flag values#

pyvisfile.silo.DB_ON#

pyvisfile.silo.DB_OFF#

Definitions for derived variable types#

pyvisfile.silo.DB_VARTYPE_SCALAR#

pyvisfile.silo.DB_VARTYPE_VECTOR#

pyvisfile.silo.DB_VARTYPE_TENSOR#

pyvisfile.silo.DB_VARTYPE_SYMTENSOR#

pyvisfile.silo.DB_VARTYPE_ARRAY#

pyvisfile.silo.DB_VARTYPE_MATERIAL#

pyvisfile.silo.DB_VARTYPE_SPECIES#

pyvisfile.silo.DB_VARTYPE_LABEL#

Definitions for CSG boundary types#

pyvisfile.silo.DBCSG_QUADRIC_G#

pyvisfile.silo.DBCSG_SPHERE_PR#

pyvisfile.silo.DBCSG_ELLIPSOID_PRRR#

pyvisfile.silo.DBCSG_PLANE_G#

pyvisfile.silo.DBCSG_PLANE_X#

pyvisfile.silo.DBCSG_PLANE_Y#

pyvisfile.silo.DBCSG_PLANE_Z#

pyvisfile.silo.DBCSG_PLANE_PN#

pyvisfile.silo.DBCSG_PLANE_PPP#

pyvisfile.silo.DBCSG_CYLINDER_PNLR#

pyvisfile.silo.DBCSG_CYLINDER_PPR#

pyvisfile.silo.DBCSG_BOX_XYZXYZ#

pyvisfile.silo.DBCSG_CONE_PNLA#

pyvisfile.silo.DBCSG_CONE_PPA#

pyvisfile.silo.DBCSG_POLYHEDRON_KF#

pyvisfile.silo.DBCSG_HEX_6F#

pyvisfile.silo.DBCSG_TET_4F#

pyvisfile.silo.DBCSG_PYRAMID_5F#

pyvisfile.silo.DBCSG_PRISM_5F#

Definitions for 2D CSG boundary types#

pyvisfile.silo.DBCSG_QUADRATIC_G#

pyvisfile.silo.DBCSG_CIRCLE_PR#

pyvisfile.silo.DBCSG_ELLIPSE_PRR#

pyvisfile.silo.DBCSG_LINE_G#

pyvisfile.silo.DBCSG_LINE_X#

pyvisfile.silo.DBCSG_LINE_Y#

pyvisfile.silo.DBCSG_LINE_PN#

pyvisfile.silo.DBCSG_LINE_PP#

pyvisfile.silo.DBCSG_BOX_XYXY#

pyvisfile.silo.DBCSG_ANGLE_PNLA#

pyvisfile.silo.DBCSG_ANGLE_PPA#

pyvisfile.silo.DBCSG_POLYGON_KP#

pyvisfile.silo.DBCSG_TRI_3P#

pyvisfile.silo.DBCSG_QUAD_4P#

Definitions for CSG Region operators#

pyvisfile.silo.DBCSG_INNER#

pyvisfile.silo.DBCSG_OUTER#

pyvisfile.silo.DBCSG_ON#

pyvisfile.silo.DBCSG_UNION#

pyvisfile.silo.DBCSG_INTERSECT#

pyvisfile.silo.DBCSG_DIFF#

pyvisfile.silo.DBCSG_COMPLIMENT#

pyvisfile.silo.DBCSG_XFORM#

pyvisfile.silo.DBCSG_SWEEP#

Shape types#

These constants only work for Silo 4.6.1 and newer.

pyvisfile.silo.DB_ZONETYPE_BEAM#

pyvisfile.silo.DB_ZONETYPE_TRIANGLE#

pyvisfile.silo.DB_ZONETYPE_QUAD#

pyvisfile.silo.DB_ZONETYPE_POLYHEDRON#

pyvisfile.silo.DB_ZONETYPE_TET#

pyvisfile.silo.DB_ZONETYPE_PYRAMID#

pyvisfile.silo.DB_ZONETYPE_PRISM#

pyvisfile.silo.DB_ZONETYPE_HEX#

Data types#

class pyvisfile.silo.DBdatatype#

DB_INT#

DB_SHORT#

DB_LONG#

DB_LONG_LONG#

DB_FLOAT#

DB_DOUBLE#

DB_CHAR#

DB_NOTYPE#

Object types#

class pyvisfile.silo.DBObjectType#

DB_INVALID_OBJECT#

DB_QUADMESH#

DB_QUADVAR#

DB_UCDMESH#

DB_UCDVAR#

DB_MULTIMESH#

DB_MULTIVAR#

DB_MULTIMAT#

DB_MULTIMATSPECIES#

DB_MULTIBLOCKMESH#

DB_MULTIBLOCKVAR#

DB_MULTIMESHADJ#

DB_MATERIAL#

DB_MATSPECIES#

DB_FACELIST#

DB_ZONELIST#

DB_EDGELIST#

DB_PHZONELIST#

DB_CSGZONELIST#

DB_CSGMESH#

DB_CSGVAR#

DB_CURVE#

DB_DEFVARS#

DB_POINTMESH#

DB_POINTVAR#

DB_ARRAY#

DB_DIR#

DB_VARIABLE#

DB_USERDEF#

Usage Reference for pyvisfile.silo#

Database file object#

Support for Parallel Computation#

Supporting Objects#

Data objects#

Constants#

Drivers#

Flags for DBCreate#

Flags for DBOpen#

Target machine for DBCreate#

Options#

Error trapping method#

Errors#

Definitions for MAJOR_ORDER#

Definitions for COORD_TYPE#

Definitions for CENTERING#

Definitions for COORD_SYSTEM#

Definitions for ZONE FACE_TYPE#

Definitions for PLANAR#

Definitions for flag values#

Definitions for derived variable types#

Definitions for CSG boundary types#

Definitions for 2D CSG boundary types#

Definitions for CSG Region operators#

Shape types#

Data types#

Object types#

Usage Reference for `pyvisfile.silo`#