Usage Reference for `pyvisfile.silo`¶

pyvisfile.silo.get_silo_version()¶

pyvisfile.silo.set_deprecate_warnings(max)¶: Silo 4.6.1 or newer only.

Database file object¶

class pyvisfile.silo.SiloFile[source]¶

close()¶

get_toc()¶: Returns a DBToc instance.

get_curve(name)¶: Returns a DBCurve instance.

get_quadmesh(name)¶: Returns a DBQuadMesh instance.

get_quadvar(name)¶: Returns a DBQuadVar instance.

put_curve(*args, **kwargs)[source]¶

Overloaded function.

put_curve(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float32], arg2: numpy.ndarray[numpy.float32], arg3: (anonymous namespace)::DBoptlistWrapper) -> None
put_curve(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float64], arg2: numpy.ndarray[numpy.float64], arg3: (anonymous namespace)::DBoptlistWrapper) -> None

put_defvars(vname, vars)[source]¶

Add an defined variable (“expression”) to this database.

The vars argument consists of a list of tuples of type (name, definition) or (name, definition, DB_VARTYPE_SCALAR | DB_VARTYPE_VECTOR) or even (name, definition, DB_VARTYPE_XXX, {options}) If the type is not specified, scalar is assumed.

put_multimesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: sequence, arg2: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_multivar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: sequence, arg2: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_pointmesh(*args, **kwargs)[source]¶

Overloaded function.

put_pointmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float32], arg2: (anonymous namespace)::DBoptlistWrapper) -> None
put_pointmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: numpy.ndarray[numpy.float64], arg2: (anonymous namespace)::DBoptlistWrapper) -> None

put_pointvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_pointvar1(*args, **kwargs)[source]¶

Overloaded function.

put_pointvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: (anonymous namespace)::DBoptlistWrapper) -> None
put_pointvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: (anonymous namespace)::DBoptlistWrapper) -> None

put_quadmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: object, arg2: int, arg3: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_quadvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: object, arg4: object, arg5: int, arg6: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_quadvar1(*args, **kwargs)[source]¶

Overloaded function.

put_quadvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: sequence, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) -> None
put_quadvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: sequence, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) -> None

put_ucdmesh(*args, **kwargs)[source]¶

Overloaded function.

put_ucdmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: sequence, arg2: numpy.ndarray[numpy.float32], arg3: int, arg4: str, arg5: str, arg6: (anonymous namespace)::DBoptlistWrapper) -> None
put_ucdmesh(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: sequence, arg2: numpy.ndarray[numpy.float64], arg3: int, arg4: str, arg5: str, arg6: (anonymous namespace)::DBoptlistWrapper) -> None

put_ucdvar(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: object, arg3: object, arg4: int, arg5: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

put_ucdvar1(*args, **kwargs)[source]¶

Overloaded function.

put_ucdvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float32], arg3: int, arg4: (anonymous namespace)::DBoptlistWrapper) -> None
put_ucdvar1(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: str, arg2: numpy.ndarray[numpy.float64], arg3: int, arg4: (anonymous namespace)::DBoptlistWrapper) -> None

put_zonelist_2(self: pyvisfile.silo._internal.DBFile, arg0: str, arg1: int, arg2: int, arg3: std::vector<int, std::allocator<int> >, arg4: int, arg5: int, arg6: std::vector<int, std::allocator<int> >, arg7: std::vector<int, std::allocator<int> >, arg8: std::vector<int, std::allocator<int> >, arg9: (anonymous namespace)::DBoptlistWrapper) → None[source]¶

Support for Parallel Computation¶

class pyvisfile.silo.ParallelSiloFile(pathname, rank, ranks, *args, **kwargs)[source]¶

A SiloFile that automatically creates a parallel master file.

This class is meant to be instantiated on every rank of an MPI computation. It creates one data file per rank, and it automatically chooses a rank that writes a master file.

The contents of the master file is automatically built, without any further user intervention.

A .silo extension is automatically appended to pathname for the master file, as are rank numbers and the extension for each individual rank.

This class can be used as a context manager in with statement.

__init__(pathname, rank, ranks, *args, **kwargs)[source]¶

close()[source]¶

put_zonelist(*args, **kwargs)[source]¶

put_zonelist_2(*args, **kwargs)[source]¶

put_ucdmesh(mname, coordnames, coords, nzones, zonel_name, facel_name, optlist)[source]¶

put_ucdvar1(vname, mname, vec, centering, optlist=None)[source]¶

put_ucdvar(vname, mname, varnames, vars, centering, optlist=None)[source]¶

put_defvars(vname, vars)[source]¶

Add an defined variable (“expression”) to this database.

The vars argument consists of a list of tuples of type (name, definition) or (name, definition, DB_VARTYPE_SCALAR | DB_VARTYPE_VECTOR). or even (name, definition, DB_VARTYPE_XXX, {options}). If the type is not specified, scalar is assumed.

put_pointmesh(mname, coords, optlist=None)[source]¶

put_pointvar1(vname, mname, var, optlist=None)[source]¶

put_pointvar(vname, mname, vars, optlist=None)[source]¶

put_quadmesh(mname, coords, coordtype=130, optlist=None)[source]¶

put_quadvar1(vname, mname, var, dims, centering, optlist=None)[source]¶

put_quadvar(vname, mname, varnames, vars, dims, centering, optlist=None)[source]¶

Supporting Objects¶

class pyvisfile.silo.IntVector¶

append(val)¶

extend(iterable)¶

reserve(count)¶

Data objects¶

class pyvisfile.silo.DBToc¶

array_names¶

csgmesh_names¶

csgvar_names¶

curve_names¶

defvars_names¶

dir_names¶

groupelmap_names¶

mat_names¶

matspecies_names¶

mrgtree_names¶

mrgvar_names¶

multimat_names¶

multimatspecies_names¶

multimesh_names¶

multimeshadj_names¶

multivar_names¶

obj_names¶

ptmesh_names¶

ptvar_names¶

qmesh_names¶

qvar_names¶

ucdmesh_names¶

ucdvar_names¶

var_names¶

class pyvisfile.silo.DBCurve¶

id¶

origin¶

reference¶

title¶

x¶

xlabel¶

xunits¶

xvarname¶

y¶

ylabel¶

yunits¶

yvarname¶

class pyvisfile.silo.DBQuadMesh¶

base_index¶

block_no¶

coord_sys¶

coords¶

coordtype¶

cycle¶

dtime¶

facetype¶

group_no¶

guihide¶

id¶

labels¶

major_order¶

max_extents¶

max_index¶

min_extents¶

min_index¶

mrgtree_name¶

name¶

ndims¶

nnodes¶

nspace¶

origin¶

planar¶

size_index¶

start_index¶

stride¶

time¶

units¶

class pyvisfile.silo.DBQuadVar¶

align¶

ascii_labels¶

cycle¶

dtime¶

guihide¶

id¶

label¶

major_order¶

max_index¶

meshid¶

meshname¶

min_index¶

mixlen¶

name¶

ndims¶

nels¶

nvals¶

origin¶

stride¶

time¶

units¶

use_specmf¶

vals¶

Constants¶

Drivers¶

pyvisfile.silo.DB_NETCDF¶

pyvisfile.silo.DB_PDB¶

pyvisfile.silo.DB_TAURUS¶

pyvisfile.silo.DB_UNKNOWN¶

pyvisfile.silo.DB_DEBUG¶

pyvisfile.silo.DB_HDF5¶

The below entries only work for Silo 4.6.1 and newer.

pyvisfile.silo.DB_HDF5_SEC2¶

pyvisfile.silo.DB_HDF5_STDIO¶

pyvisfile.silo.DB_HDF5_CORE¶

pyvisfile.silo.DB_HDF5_MPIO¶

pyvisfile.silo.DB_HDF5_MPIOP¶

Flags for DBCreate¶

pyvisfile.silo.DB_CLOBBER¶

pyvisfile.silo.DB_NOCLOBBER¶

Flags for DBOpen¶

pyvisfile.silo.DB_READ¶

pyvisfile.silo.DB_APPEND¶

Target machine for DBCreate¶

pyvisfile.silo.DB_LOCAL¶

pyvisfile.silo.DB_SUN3¶

pyvisfile.silo.DB_SUN4¶

pyvisfile.silo.DB_SGI¶

pyvisfile.silo.DB_RS6000¶

pyvisfile.silo.DB_CRAY¶

pyvisfile.silo.DB_INTEL¶

Options¶

pyvisfile.silo.DBOPT_ALIGN¶

pyvisfile.silo.DBOPT_COORDSYS¶

pyvisfile.silo.DBOPT_CYCLE¶

pyvisfile.silo.DBOPT_FACETYPE¶

pyvisfile.silo.DBOPT_HI_OFFSET¶

pyvisfile.silo.DBOPT_LO_OFFSET¶

pyvisfile.silo.DBOPT_LABEL¶

pyvisfile.silo.DBOPT_XLABEL¶

pyvisfile.silo.DBOPT_YLABEL¶

pyvisfile.silo.DBOPT_ZLABEL¶

pyvisfile.silo.DBOPT_MAJORORDER¶

pyvisfile.silo.DBOPT_NSPACE¶

pyvisfile.silo.DBOPT_ORIGIN¶

pyvisfile.silo.DBOPT_PLANAR¶

pyvisfile.silo.DBOPT_TIME¶

pyvisfile.silo.DBOPT_UNITS¶

pyvisfile.silo.DBOPT_XUNITS¶

pyvisfile.silo.DBOPT_YUNITS¶

pyvisfile.silo.DBOPT_ZUNITS¶

pyvisfile.silo.DBOPT_DTIME¶

pyvisfile.silo.DBOPT_USESPECMF¶

pyvisfile.silo.DBOPT_XVARNAME¶

pyvisfile.silo.DBOPT_YVARNAME¶

pyvisfile.silo.DBOPT_ZVARNAME¶

pyvisfile.silo.DBOPT_ASCII_LABEL¶

pyvisfile.silo.DBOPT_MATNOS¶

pyvisfile.silo.DBOPT_NMATNOS¶

pyvisfile.silo.DBOPT_MATNAME¶

pyvisfile.silo.DBOPT_NMAT¶

pyvisfile.silo.DBOPT_NMATSPEC¶

pyvisfile.silo.DBOPT_BASEINDEX¶

pyvisfile.silo.DBOPT_ZONENUM¶

pyvisfile.silo.DBOPT_NODENUM¶

pyvisfile.silo.DBOPT_BLOCKORIGIN¶

pyvisfile.silo.DBOPT_GROUPNUM¶

pyvisfile.silo.DBOPT_GROUPORIGIN¶

pyvisfile.silo.DBOPT_NGROUPS¶

pyvisfile.silo.DBOPT_MATNAMES¶

pyvisfile.silo.DBOPT_EXTENTS_SIZE¶

pyvisfile.silo.DBOPT_EXTENTS¶

pyvisfile.silo.DBOPT_MATCOUNTS¶

pyvisfile.silo.DBOPT_MATLISTS¶

pyvisfile.silo.DBOPT_MIXLENS¶

pyvisfile.silo.DBOPT_ZONECOUNTS¶

pyvisfile.silo.DBOPT_HAS_EXTERNAL_ZONES¶

pyvisfile.silo.DBOPT_PHZONELIST¶

pyvisfile.silo.DBOPT_MATCOLORS¶

pyvisfile.silo.DBOPT_BNDNAMES¶

pyvisfile.silo.DBOPT_REGNAMES¶

pyvisfile.silo.DBOPT_ZONENAMES¶

pyvisfile.silo.DBOPT_HIDE_FROM_GUI¶

Error trapping method¶

pyvisfile.silo.DB_TOP¶

pyvisfile.silo.DB_NONE¶

pyvisfile.silo.DB_ALL¶

pyvisfile.silo.DB_ABORT¶

pyvisfile.silo.DB_SUSPEND¶

pyvisfile.silo.DB_RESUME¶

Errors¶

pyvisfile.silo.E_NOERROR¶

pyvisfile.silo.E_BADFTYPE¶

pyvisfile.silo.E_NOTIMP¶

pyvisfile.silo.E_NOFILE¶

pyvisfile.silo.E_INTERNAL¶

pyvisfile.silo.E_NOMEM¶

pyvisfile.silo.E_BADARGS¶

pyvisfile.silo.E_CALLFAIL¶

pyvisfile.silo.E_NOTFOUND¶

pyvisfile.silo.E_TAURSTATE¶

pyvisfile.silo.E_MSERVER¶

pyvisfile.silo.E_PROTO¶

pyvisfile.silo.E_NOTDIR¶

pyvisfile.silo.E_MAXOPEN¶

pyvisfile.silo.E_NOTFILTER¶

pyvisfile.silo.E_MAXFILTERS¶

pyvisfile.silo.E_FEXIST¶

pyvisfile.silo.E_FILEISDIR¶

pyvisfile.silo.E_FILENOREAD¶

pyvisfile.silo.E_SYSTEMERR¶

pyvisfile.silo.E_FILENOWRITE¶

pyvisfile.silo.E_INVALIDNAME¶

pyvisfile.silo.E_NOOVERWRITE¶

pyvisfile.silo.E_CHECKSUM¶

pyvisfile.silo.E_NERRORS¶

Definitions for MAJOR_ORDER¶

pyvisfile.silo.DB_ROWMAJOR¶

pyvisfile.silo.DB_COLMAJOR¶

Definitions for COORD_TYPE¶

pyvisfile.silo.DB_COLLINEAR¶

pyvisfile.silo.DB_NONCOLLINEAR¶

pyvisfile.silo.DB_QUAD_RECT¶

pyvisfile.silo.DB_QUAD_CURV¶

Definitions for CENTERING¶

pyvisfile.silo.DB_NOTCENT¶

pyvisfile.silo.DB_NODECENT¶

pyvisfile.silo.DB_ZONECENT¶

pyvisfile.silo.DB_FACECENT¶

pyvisfile.silo.DB_BNDCENT¶

Definitions for COORD_SYSTEM¶

pyvisfile.silo.DB_CARTESIAN¶

pyvisfile.silo.DB_CYLINDRICAL¶

pyvisfile.silo.DB_SPHERICAL¶

pyvisfile.silo.DB_NUMERICAL¶

pyvisfile.silo.DB_OTHER¶

Definitions for ZONE FACE_TYPE¶

pyvisfile.silo.DB_RECTILINEAR¶

pyvisfile.silo.DB_CURVILINEAR¶

Definitions for PLANAR¶

pyvisfile.silo.DB_AREA¶

pyvisfile.silo.DB_VOLUME¶

Definitions for flag values¶

pyvisfile.silo.DB_ON¶

pyvisfile.silo.DB_OFF¶

Definitions for derived variable types¶

pyvisfile.silo.DB_VARTYPE_SCALAR¶

pyvisfile.silo.DB_VARTYPE_VECTOR¶

pyvisfile.silo.DB_VARTYPE_TENSOR¶

pyvisfile.silo.DB_VARTYPE_SYMTENSOR¶

pyvisfile.silo.DB_VARTYPE_ARRAY¶

pyvisfile.silo.DB_VARTYPE_MATERIAL¶

pyvisfile.silo.DB_VARTYPE_SPECIES¶

pyvisfile.silo.DB_VARTYPE_LABEL¶

Definitions for CSG boundary types¶

pyvisfile.silo.DBCSG_QUADRIC_G¶

pyvisfile.silo.DBCSG_SPHERE_PR¶

pyvisfile.silo.DBCSG_ELLIPSOID_PRRR¶

pyvisfile.silo.DBCSG_PLANE_G¶

pyvisfile.silo.DBCSG_PLANE_X¶

pyvisfile.silo.DBCSG_PLANE_Y¶

pyvisfile.silo.DBCSG_PLANE_Z¶

pyvisfile.silo.DBCSG_PLANE_PN¶

pyvisfile.silo.DBCSG_PLANE_PPP¶

pyvisfile.silo.DBCSG_CYLINDER_PNLR¶

pyvisfile.silo.DBCSG_CYLINDER_PPR¶

pyvisfile.silo.DBCSG_BOX_XYZXYZ¶

pyvisfile.silo.DBCSG_CONE_PNLA¶

pyvisfile.silo.DBCSG_CONE_PPA¶

pyvisfile.silo.DBCSG_POLYHEDRON_KF¶

pyvisfile.silo.DBCSG_HEX_6F¶

pyvisfile.silo.DBCSG_TET_4F¶

pyvisfile.silo.DBCSG_PYRAMID_5F¶

pyvisfile.silo.DBCSG_PRISM_5F¶

Definitions for 2D CSG boundary types¶

pyvisfile.silo.DBCSG_QUADRATIC_G¶

pyvisfile.silo.DBCSG_CIRCLE_PR¶

pyvisfile.silo.DBCSG_ELLIPSE_PRR¶

pyvisfile.silo.DBCSG_LINE_G¶

pyvisfile.silo.DBCSG_LINE_X¶

pyvisfile.silo.DBCSG_LINE_Y¶

pyvisfile.silo.DBCSG_LINE_PN¶

pyvisfile.silo.DBCSG_LINE_PP¶

pyvisfile.silo.DBCSG_BOX_XYXY¶

pyvisfile.silo.DBCSG_ANGLE_PNLA¶

pyvisfile.silo.DBCSG_ANGLE_PPA¶

pyvisfile.silo.DBCSG_POLYGON_KP¶

pyvisfile.silo.DBCSG_TRI_3P¶

pyvisfile.silo.DBCSG_QUAD_4P¶

Definitions for CSG Region operators¶

pyvisfile.silo.DBCSG_INNER¶

pyvisfile.silo.DBCSG_OUTER¶

pyvisfile.silo.DBCSG_ON¶

pyvisfile.silo.DBCSG_UNION¶

pyvisfile.silo.DBCSG_INTERSECT¶

pyvisfile.silo.DBCSG_DIFF¶

pyvisfile.silo.DBCSG_COMPLIMENT¶

pyvisfile.silo.DBCSG_XFORM¶

pyvisfile.silo.DBCSG_SWEEP¶

Shape types¶

These constants only work for Silo 4.6.1 and newer.

pyvisfile.silo.DB_ZONETYPE_BEAM¶

pyvisfile.silo.DB_ZONETYPE_TRIANGLE¶

pyvisfile.silo.DB_ZONETYPE_QUAD¶

pyvisfile.silo.DB_ZONETYPE_POLYHEDRON¶

pyvisfile.silo.DB_ZONETYPE_TET¶

pyvisfile.silo.DB_ZONETYPE_PYRAMID¶

pyvisfile.silo.DB_ZONETYPE_PRISM¶

pyvisfile.silo.DB_ZONETYPE_HEX¶

Data types¶

class pyvisfile.silo.DBdatatype¶

DB_INT¶

DB_SHORT¶

DB_LONG¶

DB_LONG_LONG¶

DB_FLOAT¶

DB_DOUBLE¶

DB_CHAR¶

DB_NOTYPE¶

Object types¶

class pyvisfile.silo.DBObjectType¶

DB_INVALID_OBJECT¶

DB_QUADMESH¶

DB_QUADVAR¶

DB_UCDMESH¶

DB_UCDVAR¶

DB_MULTIMESH¶

DB_MULTIVAR¶

DB_MULTIMAT¶

DB_MULTIMATSPECIES¶

DB_MULTIBLOCKMESH¶

DB_MULTIBLOCKVAR¶

DB_MULTIMESHADJ¶

DB_MATERIAL¶

DB_MATSPECIES¶

DB_FACELIST¶

DB_ZONELIST¶

DB_EDGELIST¶

DB_PHZONELIST¶

DB_CSGZONELIST¶

DB_CSGMESH¶

DB_CSGVAR¶

DB_CURVE¶

DB_DEFVARS¶

DB_POINTMESH¶

DB_POINTVAR¶

DB_ARRAY¶

DB_DIR¶

DB_VARIABLE¶

DB_USERDEF¶

Usage Reference for pyvisfile.silo¶

Database file object¶

Support for Parallel Computation¶

Supporting Objects¶

Data objects¶

Constants¶

Drivers¶

Flags for DBCreate¶

Flags for DBOpen¶

Target machine for DBCreate¶

Options¶

Error trapping method¶

Errors¶

Definitions for MAJOR_ORDER¶

Definitions for COORD_TYPE¶

Definitions for CENTERING¶

Definitions for COORD_SYSTEM¶

Definitions for ZONE FACE_TYPE¶

Definitions for PLANAR¶

Definitions for flag values¶

Definitions for derived variable types¶

Definitions for CSG boundary types¶

Definitions for 2D CSG boundary types¶

Definitions for CSG Region operators¶

Shape types¶

Data types¶

Object types¶

Usage Reference for `pyvisfile.silo`¶